IL_9SRD_072

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_072 not in the Motif Atlas

Homologous match to IL_4V9F_060

Geometric discrepancy: 0.1161

The information below is about IL_4V9F_060

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.3

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

11

Unit IDs

9SRD|1|1|G|1939
9SRD|1|1|A|1940
9SRD|1|1|G|1941
*
9SRD|1|1|C|2236
9SRD|1|1|C|2237
9SRD|1|1|C|2238

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BJ

Large ribosomal subunit protein uL14

Chain BV

Large ribosomal subunit protein eL24