IL_9SRD_075

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

ACU(OMC)GG*CUGU

Length

10 nucleotides

Bulged bases

9SRD|1|1|G|2233

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_075 not in the Motif Atlas

Homologous match to IL_4V9F_062

Geometric discrepancy: 0.0718

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.3

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

9SRD|1|1|A|1945
9SRD|1|1|C|1946
9SRD|1|1|U|1947
9SRD|1|1|OMC|1948
9SRD|1|1|G|1949
9SRD|1|1|G|1950
*
9SRD|1|1|C|2231
9SRD|1|1|U|2232
9SRD|1|1|G|2233
9SRD|1|1|U|2234

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BJ

Large ribosomal subunit protein uL14