IL_9SRD_078

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

AGCUAG*UUUGUACU

Length

14 nucleotides

Bulged bases

9SRD|1|1|U|2057, 9SRD|1|1|U|2072, 9SRD|1|1|C|2076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|A|2054
9SRD|1|1|G|2055
9SRD|1|1|C|2056
9SRD|1|1|U|2057
9SRD|1|1|A|2058
9SRD|1|1|G|2059
*
9SRD|1|1|U|2070
9SRD|1|1|U|2071
9SRD|1|1|U|2072
9SRD|1|1|G|2073
9SRD|1|1|U|2074
9SRD|1|1|A|2075
9SRD|1|1|C|2076
9SRD|1|1|U|2077

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain BB

Large ribosomal subunit protein uL2

Chain Bi

Large ribosomal subunit protein eL43