IL_9SRD_082

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UGAAG*UGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_082 not in the Motif Atlas

Geometric match to IL_9DFE_074

Geometric discrepancy: 0.2123

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9SRD|1|1|U|2107
9SRD|1|1|G|2108
9SRD|1|1|A|2109
9SRD|1|1|A|2110
9SRD|1|1|G|2111
*
9SRD|1|1|U|2128
9SRD|1|1|G|2129
9SRD|1|1|A|2130
9SRD|1|1|A|2131
9SRD|1|1|G|2132

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BB

Large ribosomal subunit protein uL2