IL_9SRD_083

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_083 not in the Motif Atlas

Geometric match to IL_4V9F_070

Geometric discrepancy: 0.08

The information below is about IL_4V9F_070

Detailed Annotation

Bulged stacked bases

Broad Annotation

No text annotation

Motif group

IL_24886.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

9SRD|1|1|G|2174
9SRD|1|1|C|2175
*
9SRD|1|1|G|2205
9SRD|1|1|C|2206
9SRD|1|1|A|2207
9SRD|1|1|U|2208

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain A0

Small ribosomal subunit protein eS32