IL_9SRD_090

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GCGCAGCGUAG*CC

Length

13 nucleotides

Bulged bases

9SRD|1|1|C|2351, 9SRD|1|1|C|2356, 9SRD|1|1|G|2357, 9SRD|1|1|U|2358, 9SRD|1|1|A|2359

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|1|G|2350
9SRD|1|1|C|2351
9SRD|1|1|G|2352
9SRD|1|1|C|2353
9SRD|1|1|A|2354
9SRD|1|1|G|2355
9SRD|1|1|C|2356
9SRD|1|1|G|2357
9SRD|1|1|U|2358
9SRD|1|1|A|2359
9SRD|1|1|G|2360
*
9SRD|1|1|C|2418
9SRD|1|1|C|2419

Current chains

Chain 1

rRNA 23S

Nearby chains