IL_9SRD_108

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

9SRD|1|1|C|2957

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRD_108 not in the Motif Atlas

Homologous match to IL_4V9F_093

Geometric discrepancy: 0.1247

The information below is about IL_4V9F_093

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9SRD|1|1|C|2913
9SRD|1|1|C|2914
9SRD|1|1|U|2915
9SRD|1|1|C|2916
9SRD|1|1|U|2917
*
9SRD|1|1|A|2956
9SRD|1|1|C|2957
9SRD|1|1|G|2958

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BJ

Large ribosomal subunit protein uL14

Chain BV

Large ribosomal subunit protein eL24