IL_9SRD_118

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAUAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

9SRD|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|G|145
9SRD|1|2|A|146
9SRD|1|2|U|147
9SRD|1|2|A|148
9SRD|1|2|A|149
9SRD|1|2|C|150
*
9SRD|1|2|G|165
9SRD|1|2|C|166
9SRD|1|2|U|167
9SRD|1|2|A|168
9SRD|1|2|A|169
9SRD|1|2|U|170
9SRD|1|2|C|171

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AG

30S ribosomal protein S6e