IL_9SRD_120

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAUUAG*(4AC)GAAGAUC

Length

14 nucleotides

Bulged bases

9SRD|1|2|U|253, 9SRD|1|2|A|289

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|G|251
9SRD|1|2|A|252
9SRD|1|2|U|253
9SRD|1|2|U|254
9SRD|1|2|A|255
9SRD|1|2|G|256
*
9SRD|1|2|4AC|286
9SRD|1|2|G|287
9SRD|1|2|A|288
9SRD|1|2|A|289
9SRD|1|2|G|290
9SRD|1|2|A|291
9SRD|1|2|U|292
9SRD|1|2|C|293

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain A0

Small ribosomal subunit protein eS32

Chain AJ

30S ribosomal protein S8e

Chain AN

30S ribosomal protein S12

Chain AR

30S ribosomal protein S17