IL_9SRD_126

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UG(OMG)GCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|U|469
9SRD|1|2|G|470
9SRD|1|2|OMG|471
9SRD|1|2|G|472
9SRD|1|2|C|473
9SRD|1|2|A|474
9SRD|1|2|A|475
9SRD|1|2|G|476
*
9SRD|1|2|C|506
9SRD|1|2|G|507

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AF

30S ribosomal protein S5