IL_9SRD_128

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUGGCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9SRD|1|2|A|498, 9SRD|1|2|U|500, 9SRD|1|2|A|501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|G|481
9SRD|1|2|U|482
9SRD|1|2|G|483
9SRD|1|2|G|484
9SRD|1|2|C|485
9SRD|1|2|A|486
9SRD|1|2|G|487
*
9SRD|1|2|C|494
9SRD|1|2|G|495
9SRD|1|2|G|496
9SRD|1|2|U|497
9SRD|1|2|A|498
9SRD|1|2|A|499
9SRD|1|2|U|500
9SRD|1|2|A|501
9SRD|1|2|C|502

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AN

30S ribosomal protein S12

Chain AZ

30S ribosomal protein S3

Chain H

Dehydrogenase