IL_9SRD_156

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GACAAUG*CCUAAAC

Length

14 nucleotides

Bulged bases

9SRD|1|2|U|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|G|1221
9SRD|1|2|A|1222
9SRD|1|2|C|1223
9SRD|1|2|A|1224
9SRD|1|2|A|1225
9SRD|1|2|U|1226
9SRD|1|2|G|1227
*
9SRD|1|2|C|1258
9SRD|1|2|C|1259
9SRD|1|2|U|1260
9SRD|1|2|A|1261
9SRD|1|2|A|1262
9SRD|1|2|A|1263
9SRD|1|2|C|1264

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AH

30S ribosomal protein S7

Chain AK

30S ribosomal protein S9

Chain AL

30S ribosomal protein S10

Chain AP

30S ribosomal protein S14 type Z

Chain AU

30S ribosomal protein S19e