IL_9SRD_157

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUGC*GUAAUC

Length

10 nucleotides

Bulged bases

9SRD|1|2|G|1231, 9SRD|1|2|A|1254, 9SRD|1|2|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRD|1|2|G|1229
9SRD|1|2|U|1230
9SRD|1|2|G|1231
9SRD|1|2|C|1232
*
9SRD|1|2|G|1251
9SRD|1|2|U|1252
9SRD|1|2|A|1253
9SRD|1|2|A|1254
9SRD|1|2|U|1255
9SRD|1|2|C|1256

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AL

30S ribosomal protein S10

Chain AP

30S ribosomal protein S14 type Z

Chain AU

30S ribosomal protein S19e

Chain AZ

30S ribosomal protein S3