IL_9SRD_169
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GGCCACA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRD_169 not in the Motif Atlas
- Geometric match to IL_9E6Q_106
- Geometric discrepancy: 0.2742
- The information below is about IL_9E6Q_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_41504.2
- Basepair signature
- cWW-L-cSW-L-cSW-L-cSH-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9SRD|1|3|G|23
9SRD|1|3|G|24
9SRD|1|3|C|25
9SRD|1|3|C|26
9SRD|1|3|A|27
9SRD|1|3|C|28
9SRD|1|3|A|29
*
9SRD|1|3|U|55
9SRD|1|3|U|56
9SRD|1|3|A|57
9SRD|1|3|A|58
9SRD|1|3|G|59
9SRD|1|3|C|60
Current chains
- Chain 3
- rRNA 5S
Nearby chains
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BO
- Large ribosomal subunit protein uL18
Coloring options: