IL_9SRD_171
3D structure
- PDB id
- 9SRD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GUCUC*GAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRD_171 not in the Motif Atlas
- Homologous match to IL_4V9F_104
- Geometric discrepancy: 0.1247
- The information below is about IL_4V9F_104
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.14
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 13
Unit IDs
9SRD|1|3|G|34
9SRD|1|3|U|35
9SRD|1|3|C|36
9SRD|1|3|U|37
9SRD|1|3|C|38
*
9SRD|1|3|G|44
9SRD|1|3|A|45
9SRD|1|3|A|46
9SRD|1|3|C|47
9SRD|1|3|C|48
Current chains
- Chain 3
- rRNA 5S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BO
- Large ribosomal subunit protein uL18
Coloring options: