IL_9SRE_013
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GGAAUUG*CUUAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_013 not in the Motif Atlas
- Homologous match to IL_4V9F_006
- Geometric discrepancy: 0.0916
- The information below is about IL_4V9F_006
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9SRE|1|1|G|292
9SRE|1|1|G|293
9SRE|1|1|A|294
9SRE|1|1|A|295
9SRE|1|1|U|296
9SRE|1|1|U|297
9SRE|1|1|G|298
*
9SRE|1|1|C|305
9SRE|1|1|U|306
9SRE|1|1|U|307
9SRE|1|1|A|308
9SRE|1|1|G|309
9SRE|1|1|U|310
9SRE|1|1|A|311
9SRE|1|1|C|312
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Be
- Large ribosomal subunit protein eL37
- Chain Bj
- Large ribosomal subunit protein eL42
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