IL_9SRE_014
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- UGAGUAG*(4AC)GAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_014 not in the Motif Atlas
- Homologous match to IL_4V9F_007
- Geometric discrepancy: 0.1242
- The information below is about IL_4V9F_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9SRE|1|1|U|343
9SRE|1|1|G|344
9SRE|1|1|A|345
9SRE|1|1|G|346
9SRE|1|1|U|347
9SRE|1|1|A|348
9SRE|1|1|G|349
*
9SRE|1|1|4AC|357
9SRE|1|1|G|358
9SRE|1|1|A|359
9SRE|1|1|A|360
9SRE|1|1|A|361
9SRE|1|1|G|362
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BM
- Large ribosomal subunit protein eL15
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