IL_9SRE_030

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CGCAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRE_030 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.1264

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9SRE|1|1|C|855
9SRE|1|1|G|856
9SRE|1|1|C|857
9SRE|1|1|A|858
9SRE|1|1|G|859
*
9SRE|1|1|U|877
9SRE|1|1|G|878
9SRE|1|1|A|879
9SRE|1|1|G|880
9SRE|1|1|G|881

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BP

Large ribosomal subunit protein eL18