IL_9SRE_032
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- (OMG)AAAC*GAGAU(A2M)GC
- Length
- 13 nucleotides
- Bulged bases
- 9SRE|1|1|G|1052, 9SRE|1|1|G|1056
- QA status
- Modified nucleotides: OMG, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_032 not in the Motif Atlas
- Homologous match to IL_4V9F_024
- Geometric discrepancy: 0.1642
- The information below is about IL_4V9F_024
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.3
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRE|1|1|OMG|923
9SRE|1|1|A|924
9SRE|1|1|A|925
9SRE|1|1|A|926
9SRE|1|1|C|927
*
9SRE|1|1|G|1050
9SRE|1|1|A|1051
9SRE|1|1|G|1052
9SRE|1|1|A|1053
9SRE|1|1|U|1054
9SRE|1|1|A2M|1055
9SRE|1|1|G|1056
9SRE|1|1|C|1057
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BD
- Large ribosomal subunit protein uL4
- Chain BL
- Large ribosomal subunit protein uL15
- Chain BM
- Large ribosomal subunit protein eL15
- Chain Be
- Large ribosomal subunit protein eL37
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