IL_9SRE_054
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- UUACUCCAAAG*CGAAAAUGGACGGGG
- Length
- 26 nucleotides
- Bulged bases
- 9SRE|1|1|A|1382, 9SRE|1|1|U|1385, 9SRE|1|1|G|1386
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9SRE|1|1|U|1275
9SRE|1|1|U|1276
9SRE|1|1|A|1277
9SRE|1|1|C|1278
9SRE|1|1|U|1279
9SRE|1|1|C|1280
9SRE|1|1|C|1281
9SRE|1|1|A|1282
9SRE|1|1|A|1283
9SRE|1|1|A|1284
9SRE|1|1|G|1285
*
9SRE|1|1|C|1379
9SRE|1|1|G|1380
9SRE|1|1|A|1381
9SRE|1|1|A|1382
9SRE|1|1|A|1383
9SRE|1|1|A|1384
9SRE|1|1|U|1385
9SRE|1|1|G|1386
9SRE|1|1|G|1387
9SRE|1|1|A|1388
9SRE|1|1|C|1389
9SRE|1|1|G|1390
9SRE|1|1|G|1391
9SRE|1|1|G|1392
9SRE|1|1|G|1393
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BI
- Large ribosomal subunit protein uL13
- Chain BN
- Large ribosomal subunit protein uL16
- Chain BY
- Large ribosomal subunit protein uL30
- Chain Bc
- Large ribosomal subunit protein eL33
- Chain Bg
- Large ribosomal subunit protein eL40
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