IL_9SRE_063

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

9SRE|1|1|G|1592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRE_063 not in the Motif Atlas

Homologous match to IL_4V9F_051

Geometric discrepancy: 0.1896

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9SRE|1|1|G|1579
9SRE|1|1|C|1580
9SRE|1|1|A|1581
9SRE|1|1|A|1582
9SRE|1|1|U|1583
*
9SRE|1|1|A|1591
9SRE|1|1|G|1592
9SRE|1|1|C|1593

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19

Chain BS

Large ribosomal subunit protein uL22

Chain Bf

Large ribosomal subunit protein eL39