IL_9SRE_071

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GGGAAAC*GGC

Length

10 nucleotides

Bulged bases

9SRE|1|1|G|1928, 9SRE|1|1|A|1929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|1|G|1926
9SRE|1|1|G|1927
9SRE|1|1|G|1928
9SRE|1|1|A|1929
9SRE|1|1|A|1930
9SRE|1|1|A|1931
9SRE|1|1|C|1932
*
9SRE|1|1|G|2245
9SRE|1|1|G|2246
9SRE|1|1|C|2247

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BS

Large ribosomal subunit protein uL22

Chain Ba

Large ribosomal subunit protein eL31