IL_9SRE_081
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GUAU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_081 not in the Motif Atlas
- Homologous match to IL_4V9F_068
- Geometric discrepancy: 0.3916
- The information below is about IL_4V9F_068
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_73108.4
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 25
Unit IDs
9SRE|1|1|G|2102
9SRE|1|1|U|2103
9SRE|1|1|A|2104
9SRE|1|1|U|2105
*
9SRE|1|1|A|2134
9SRE|1|1|C|2135
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Transfer RNA; tRNA
- Chain BB
- Large ribosomal subunit protein uL2
- Chain H
- Dehydrogenase
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