IL_9SRE_083
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GC*GCAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_083 not in the Motif Atlas
- Geometric match to IL_4V9F_070
- Geometric discrepancy: 0.075
- The information below is about IL_4V9F_070
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- No text annotation
- Motif group
- IL_24886.4
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 13
Unit IDs
9SRE|1|1|G|2174
9SRE|1|1|C|2175
*
9SRE|1|1|G|2205
9SRE|1|1|C|2206
9SRE|1|1|A|2207
9SRE|1|1|U|2208
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A0
- Small ribosomal subunit protein eS32
- Chain H
- Dehydrogenase
Coloring options: