IL_9SRE_084
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CGAAAUUC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 9SRE|1|1|A|2179, 9SRE|1|1|U|2185, 9SRE|1|1|U|2204
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_084 not in the Motif Atlas
- Geometric match to IL_9DFE_077
- Geometric discrepancy: 0.0776
- The information below is about IL_9DFE_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.3
- Basepair signature
- cWW-L-tHH-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 9
Unit IDs
9SRE|1|1|C|2175
9SRE|1|1|G|2176
9SRE|1|1|A|2177
9SRE|1|1|A|2178
9SRE|1|1|A|2179
9SRE|1|1|U|2180
9SRE|1|1|U|2181
9SRE|1|1|C|2182
9SRE|1|1|5MC|2183
9SRE|1|1|U|2184
9SRE|1|1|U|2185
9SRE|1|1|G|2186
*
9SRE|1|1|C|2202
9SRE|1|1|5MC|2203
9SRE|1|1|U|2204
9SRE|1|1|G|2205
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain A0
- Small ribosomal subunit protein eS32
- Chain H
- Dehydrogenase
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