IL_9SRE_090

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GCGCAGCGUAG*CC

Length

13 nucleotides

Bulged bases

9SRE|1|1|C|2351, 9SRE|1|1|C|2356, 9SRE|1|1|U|2358, 9SRE|1|1|A|2359

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|1|G|2350
9SRE|1|1|C|2351
9SRE|1|1|G|2352
9SRE|1|1|C|2353
9SRE|1|1|A|2354
9SRE|1|1|G|2355
9SRE|1|1|C|2356
9SRE|1|1|G|2357
9SRE|1|1|U|2358
9SRE|1|1|A|2359
9SRE|1|1|G|2360
*
9SRE|1|1|C|2418
9SRE|1|1|C|2419

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain BA

Large ribosomal subunit protein uL1