IL_9SRE_092

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CGUCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9SRE|1|1|C|2372

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRE_092 not in the Motif Atlas

Geometric match to IL_7JRS_007

Geometric discrepancy: 0.2753

The information below is about IL_7JRS_007

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9SRE|1|1|C|2369
9SRE|1|1|G|2370
9SRE|1|1|U|2371
9SRE|1|1|C|2372
9SRE|1|1|G|2373
9SRE|1|1|A|2374
9SRE|1|1|A|2375
9SRE|1|1|G|2376
*
9SRE|1|1|U|2395
9SRE|1|1|G|2396
9SRE|1|1|G|2397
9SRE|1|1|A|2398
9SRE|1|1|G|2399

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BA

Large ribosomal subunit protein uL1