IL_9SRE_100
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GCGAG*CGACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_100 not in the Motif Atlas
- Homologous match to IL_4V9F_085
- Geometric discrepancy: 0.2149
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.4
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9SRE|1|1|G|2698
9SRE|1|1|C|2699
9SRE|1|1|G|2700
9SRE|1|1|A|2701
9SRE|1|1|G|2702
*
9SRE|1|1|C|2712
9SRE|1|1|G|2713
9SRE|1|1|A|2714
9SRE|1|1|C|2715
9SRE|1|1|C|2716
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BN
- Large ribosomal subunit protein uL16
- Chain Bg
- Large ribosomal subunit protein eL40
- Chain H
- Dehydrogenase
Coloring options: