IL_9SRE_111
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- GAUAAG*(4AC)GAAGC
- Length
- 12 nucleotides
- Bulged bases
- 9SRE|1|1|A|2995
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9SRE_111 not in the Motif Atlas
- Homologous match to IL_4V9F_096
- Geometric discrepancy: 0.1028
- The information below is about IL_4V9F_096
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_91079.1
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 8
Unit IDs
9SRE|1|1|G|2967
9SRE|1|1|A|2968
9SRE|1|1|U|2969
9SRE|1|1|A|2970
9SRE|1|1|A|2971
9SRE|1|1|G|2972
*
9SRE|1|1|4AC|2992
9SRE|1|1|G|2993
9SRE|1|1|A|2994
9SRE|1|1|A|2995
9SRE|1|1|G|2996
9SRE|1|1|C|2997
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BF
- Large ribosomal subunit protein uL6
- Chain BI
- Large ribosomal subunit protein uL13
- Chain Bg
- Large ribosomal subunit protein eL40
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