IL_9SRE_118

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GAUAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

9SRE|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|G|145
9SRE|1|2|A|146
9SRE|1|2|U|147
9SRE|1|2|A|148
9SRE|1|2|A|149
9SRE|1|2|C|150
*
9SRE|1|2|G|165
9SRE|1|2|C|166
9SRE|1|2|U|167
9SRE|1|2|A|168
9SRE|1|2|A|169
9SRE|1|2|U|170
9SRE|1|2|C|171

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AG

30S ribosomal protein S6e