IL_9SRE_126

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

UG(OMG)GCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|U|469
9SRE|1|2|G|470
9SRE|1|2|OMG|471
9SRE|1|2|G|472
9SRE|1|2|C|473
9SRE|1|2|A|474
9SRE|1|2|A|475
9SRE|1|2|G|476
*
9SRE|1|2|C|506
9SRE|1|2|G|507

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AF

30S ribosomal protein S5

Chain AN

30S ribosomal protein S12