IL_9SRE_128

3D structure

PDB id

9SRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GUGGCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

9SRE|1|2|U|497, 9SRE|1|2|A|498, 9SRE|1|2|U|500, 9SRE|1|2|A|501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SRE|1|2|G|481
9SRE|1|2|U|482
9SRE|1|2|G|483
9SRE|1|2|G|484
9SRE|1|2|C|485
9SRE|1|2|A|486
9SRE|1|2|G|487
*
9SRE|1|2|C|494
9SRE|1|2|G|495
9SRE|1|2|G|496
9SRE|1|2|U|497
9SRE|1|2|A|498
9SRE|1|2|A|499
9SRE|1|2|U|500
9SRE|1|2|A|501
9SRE|1|2|C|502

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain AN

30S ribosomal protein S12

Chain AZ

30S ribosomal protein S3

Chain H

Dehydrogenase