IL_9SRO_021

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9SRO|1|A|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_021 not in the Motif Atlas

Geometric match to IL_8B0X_021

Geometric discrepancy: 0.0509

The information below is about IL_8B0X_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9SRO|1|A|G|446
9SRO|1|A|G|447
9SRO|1|A|A|448
9SRO|1|A|G|449
9SRO|1|A|G|450
*
9SRO|1|A|C|483
9SRO|1|A|G|484
9SRO|1|A|U|485
9SRO|1|A|U|486
9SRO|1|A|A|487
9SRO|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16