IL_9SRO_056

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

AGU*ACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_056 not in the Motif Atlas

Geometric match to IL_4KQ0_003

Geometric discrepancy: 0.1974

The information below is about IL_4KQ0_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9SRO|1|A|A|1311
9SRO|1|A|G|1312
9SRO|1|A|U|1313
*
9SRO|1|A|A|1324
9SRO|1|A|C|1325
9SRO|1|A|U|1326

Current chains

Chain A

16S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL31A

Chain M

Small ribosomal subunit protein uS13

Chain S

Small ribosomal subunit protein uS19