IL_9SRO_069

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_069 not in the Motif Atlas

Homologous match to IL_7A0S_003

Geometric discrepancy: 0.2078

The information below is about IL_7A0S_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9SRO|1|a|G|43
9SRO|1|a|A|44
*
9SRO|1|a|U|434
9SRO|1|a|C|435
9SRO|1|a|C|436

Current chains

Chain a

23S rRNA

Nearby chains