IL_9SRO_073

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_073 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0576

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9SRO|1|a|C|239
9SRO|1|a|C|240
9SRO|1|a|A|241
9SRO|1|a|G|242
9SRO|1|a|U|243
9SRO|1|a|A|244
9SRO|1|a|G|245
*
9SRO|1|a|C|253
9SRO|1|a|G|254
9SRO|1|a|A|255
9SRO|1|a|A|256
9SRO|1|a|C|257
9SRO|1|a|G|258

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain k

Large ribosomal subunit protein uL15