IL_9SRO_075

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_075 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.1794

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9SRO|1|a|C|274
9SRO|1|a|C|275
9SRO|1|a|U|276
9SRO|1|a|G|277
9SRO|1|a|A|278
9SRO|1|a|A|279
9SRO|1|a|U|280
9SRO|1|a|C|281
*
9SRO|1|a|G|359
9SRO|1|a|U|360
9SRO|1|a|G|361
9SRO|1|a|A|362
9SRO|1|a|G|363

Current chains

Chain a

23S rRNA

Nearby chains