IL_9SRO_085

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_085 not in the Motif Atlas

Geometric match to IL_8B0X_083

Geometric discrepancy: 0.0634

The information below is about IL_8B0X_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9SRO|1|a|U|703
9SRO|1|a|G|704
9SRO|1|a|A|705
9SRO|1|a|A|706
9SRO|1|a|G|707
*
9SRO|1|a|U|724
9SRO|1|a|G|725
9SRO|1|a|G|726
9SRO|1|a|A|727
9SRO|1|a|G|728

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2