IL_9SRO_096

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_096 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.1777

The information below is about IL_4WFL_001

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9SRO|1|a|G|875
9SRO|1|a|C|876
9SRO|1|a|A|877
9SRO|1|a|A|878
9SRO|1|a|G|879
*
9SRO|1|a|C|898
9SRO|1|a|A|899
9SRO|1|a|A|900
9SRO|1|a|C|901
9SRO|1|a|C|902

Current chains

Chain a

23S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain l

Large ribosomal subunit protein uL16