IL_9SRO_138

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SRO_138 not in the Motif Atlas

Geometric match to IL_8B0X_136

Geometric discrepancy: 0.0879

The information below is about IL_8B0X_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77691.7

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

9SRO|1|a|U|1864
9SRO|1|a|U|1865
9SRO|1|a|A|1866
9SRO|1|a|G|1867
*
9SRO|1|a|C|1874
9SRO|1|a|G|1875
9SRO|1|a|A|1876
9SRO|1|a|A|1877
9SRO|1|a|G|1878

Current chains

Chain a

23S rRNA

Nearby chains