IL_9SS1_012

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

9SS1|1|D1|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_012 not in the Motif Atlas

Homologous match to IL_6CZR_121

Geometric discrepancy: 0.4611

The information below is about IL_6CZR_121

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.5

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

9SS1|1|D1|G|147
9SS1|1|D1|G|148
9SS1|1|D1|A|149
9SS1|1|D1|U|150
9SS1|1|D1|A|151
9SS1|1|D1|A|152
9SS1|1|D1|C|153
*
9SS1|1|D1|G|168
9SS1|1|D1|C|169
9SS1|1|D1|U|170
9SS1|1|D1|A|171
9SS1|1|D1|A|172
9SS1|1|D1|U|173
9SS1|1|D1|A|174
9SS1|1|D1|C|175

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AS

Small ribosomal subunit protein bS20