IL_9SS1_031

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_031 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.0816

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9SS1|1|D1|G|654
9SS1|1|D1|A|655
*
9SS1|1|D1|U|751
9SS1|1|D1|G|752
9SS1|1|D1|A|753
9SS1|1|D1|C|754

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AG

Small ribosomal subunit protein uS8

Chain AN

Small ribosomal subunit protein uS15