IL_9SS1_049

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

9SS1|1|D1|A|1257, 9SS1|1|D1|G|1278, 9SS1|1|D1|A|1280, 9SS1|1|D1|C|1281

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_049 not in the Motif Atlas

Geometric match to IL_8B0X_054

Geometric discrepancy: 0.342

The information below is about IL_8B0X_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9SS1|1|D1|G|1255
9SS1|1|D1|A|1256
9SS1|1|D1|A|1257
9SS1|1|D1|G|1258
*
9SS1|1|D1|C|1277
9SS1|1|D1|G|1278
9SS1|1|D1|G|1279
9SS1|1|D1|A|1280
9SS1|1|D1|C|1281
9SS1|1|D1|C|1282

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains