IL_9SS1_056

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAU*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS1_056 not in the Motif Atlas

Homologous match to IL_6CZR_411

Geometric discrepancy: 0.534

The information below is about IL_6CZR_411

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

9SS1|1|D1|C|1412
9SS1|1|D1|A|1413
9SS1|1|D1|U|1414
*
9SS1|1|D1|G|1486
9SS1|1|D1|G|1487
9SS1|1|D1|G|1488

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12

Chain F1

Translation initiation factor IF-1