IL_9SS2_039

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

9SS2|1|D1|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_039 not in the Motif Atlas

Homologous match to IL_6CZR_147

Geometric discrepancy: 0.1472

The information below is about IL_6CZR_147

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

9SS2|1|D1|G|922
9SS2|1|D1|A|923
*
9SS2|1|D1|U|1393
9SS2|1|D1|A|1394
9SS2|1|D1|C|1395

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AD

Small ribosomal subunit protein uS5