IL_9SS2_043

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_043 not in the Motif Atlas

Geometric match to IL_8B0X_042

Geometric discrepancy: 0.2608

The information below is about IL_8B0X_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49794.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9SS2|1|D1|G|993
9SS2|1|D1|A|994
9SS2|1|D1|C|995
9SS2|1|D1|A|996
9SS2|1|D1|U|997
*
9SS2|1|D1|A|1044
9SS2|1|D1|C|1045

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AM

Small ribosomal subunit protein uS14