IL_9SS2_061

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

9SS2|1|D1|A|1492, 9SS2|1|D1|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_061 not in the Motif Atlas

Geometric match to IL_8UO6_002

Geometric discrepancy: 0.1961

The information below is about IL_8UO6_002

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9SS2|1|D1|C|1407
9SS2|1|D1|A|1408
9SS2|1|D1|C|1409
*
9SS2|1|D1|G|1491
9SS2|1|D1|A|1492
9SS2|1|D1|A|1493
9SS2|1|D1|G|1494

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AK

Small ribosomal subunit protein uS12

Chain F1

Translation initiation factor IF-1

Chain F3

Translation initiation factor IF-3