IL_9SS2_066

3D structure

PDB id

9SS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAAC*GAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS2_066 not in the Motif Atlas

Geometric match to IL_8B0X_064

Geometric discrepancy: 0.171

The information below is about IL_8B0X_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9SS2|1|D1|U|1445
9SS2|1|D1|A|1446
9SS2|1|D1|A|1447
9SS2|1|D1|C|1448
*
9SS2|1|D1|G|1455
9SS2|1|D1|A|1456
9SS2|1|D1|G|1457

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AS

Small ribosomal subunit protein bS20