IL_9SS5_007

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_007 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0761

The information below is about IL_8B0X_071

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

9SS5|1|D2|C|239
9SS5|1|D2|C|240
9SS5|1|D2|A|241
9SS5|1|D2|G|242
9SS5|1|D2|U|243
9SS5|1|D2|A|244
9SS5|1|D2|G|245
*
9SS5|1|D2|C|253
9SS5|1|D2|G|254
9SS5|1|D2|A|255
9SS5|1|D2|A|256
9SS5|1|D2|C|257
9SS5|1|D2|G|258

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B8

Large ribosomal subunit protein bL35

Chain BO

Large ribosomal subunit protein uL15