IL_9SS5_009

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

9SS5|1|D2|U|276

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9SS5_009 not in the Motif Atlas

Geometric match to IL_8B0X_073

Geometric discrepancy: 0.3464

The information below is about IL_8B0X_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22028.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9SS5|1|D2|C|274
9SS5|1|D2|C|275
9SS5|1|D2|U|276
9SS5|1|D2|G|277
9SS5|1|D2|A|278
9SS5|1|D2|A|279
9SS5|1|D2|U|280
9SS5|1|D2|C|281
*
9SS5|1|D2|G|359
9SS5|1|D2|U|360
9SS5|1|D2|G|361
9SS5|1|D2|A|362
9SS5|1|D2|G|363

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains